- H.I. Emara, T.O. Said, Naglaa A. El-Naggar and M.A. Shreadah (2008). Aliphatic and polycyclic hydrocarbon compounds as chemical markers for pollution sources in relation to physico-chemical characteristics of the Eastern Harbour (Egyptian Mediterranean Sea). Egyptian Journal of Aquatic research, Vol. 34, No. 3: 1-19.
- H.I. Emara, R.M. Abou-Shahba, T.O. Said, E. M. Attia and Naglaa A. El-Naggar (2009). Studies on chlorinated pesticides and polychlorinated biphenyls in some fish species from the Eastern Harbour of Alexandria, Egypt. Proceedings of International Workshop on "Integrated Coastal Zone Management", INOC -IMST, Izmir-Turkey, 20-22 October 2009, pp. 342-349.
- H.I. Emara, Abou-Shahba, T.O. Said, E. M. Attia and Naglaa A. El-Naggar (2009). Composition and distribution of chlorinated pesticides and polychlorinated biphenyls in sediments from the Eastern Harbour area of Alexandria Proceedings of International Workshop on "Integrated Coastal Zone Management", INOC -IMST, Izmir-Turkey, 20-22 October 2009, pp. 370-378.
- H.I. Emara, Abou-Shahba, T.O. Said, E. M. Attia and Naglaa A. El-Naggar (2010). "Chlorinated pesticides and polychlorinated biphenyls in sea water from semi-enclosed basin of the Mediterranean Sea Alexandria", INOC-Tischreen University, International conference on Biodiversity of the Aquatic Environment, Lattakia-Syria, 13-15 December, pp. 419-428.
- Naglaa A. El-Naggar, Emara I. H, Rifaat E.A., Said O.T., Abou-Shahba M.R., Shaltout A.N. and El-Naggar F.M. (2013). “Some Anthropogenic Driven Toxic Pollutants in El-Max Bay And its Neighborhood, Alexandria, Egypt”, World Applied Sciences Journal 21 (10), pp. 1512-152. https://www.idosi.org/wasj/wasj21(10)13/17.pdf
- Ahmed E. Rifaat and Naglaa A. El-Naggar (2013). Computation and Classification of the Sediment Transport Model in El-Max Bay, Alexandria, Egypt, JKAU: Mar. Sci., Vol. 24, No.2.
- Hanan M. Khairy, Nayrah A. Shaltout, Mona F. El-Naggar, Naglaa A. El-Naggar (2014), Impact of elevated CO2 concentrations on the growth and ultrastructure of non-calcifying marine diatom (Chaetoceros gracilis F.Schu¨tt), Egyptian Journal of Aquatic Research , 40, 243–250. (Indexed in Scopus – Elsevier, Q1)
https://doi.org/10.1016/j.ejar.2014.08.002
https://www.sciencedirect.com/science/article/pii/S1687428514000703
8. Naglaa A. El-Naggar, Ahmed E. Rifaat and Mona Kh. Khalil (2016), Numerical modelling on water flow in Manzala Lake, Nile Delta, Northern Egypt, International Journal of Contemporary Applied Sciences, Vol. 3(4), 28-44.
http://www.ijcar.net/previous-issues/vol-3-no-4-april-2016/
https://www.researchgate.net/publication/332104815_NUMERICAL_MODELLING_ON_WATER_FLOW_IN_MANZALA_LAKE_NILE_DELTA_NORTHERN_EGYPT
9. Naglaa A. El-Naggar, Hosny I. Emara, Madelyn N. Moawad, Yosry A. Soliman, Abeer A.M. El-Sayed, Detection of PAHs along Alexandria coastal water, Egyptian Mediterranean Sea, Egyptian Journal of Aquatic Research, , Vol. 44, Issue 1, 2018, Pages 9-14. (Indexed in Scopus – Elsevier, Q1)
https://doi.org/10.1016/j.ejar.2018.02.003
https://www.sciencedirect.com/science/article/pii/S1687428518300062
10. Naglaa A. El-Naggar; Laila A. Mohamed; Ahmed Abdel-Halim; Hosny E. Emara. "Environmental Characteristics of the Egyptian Mediterranean Coast". Egyptian Journal of Aquatic Biology and Fisheries, 23, 2, 2019, 475-490. DOI: 10.21608/EJABF.2019.34027
https://www.researchgate.net/publication/333683353_Environmental_Characteristics_of_the_Egyptian_Mediterranean_Coast
11. Ahmed F. Mansour; Naglaa A. El-Naggar; Hussein A. El-Naggar; Howaida Y. Zakaria; Fekry M. Abo-Senna. "Temporal and spatial variations of zooplankton distribution in the Eastern Harbor, Alexandria, Egypt.". Egyptian Journal of Aquatic Biology and Fisheries, 24, 4, 2020, 421-435. https://ejabf.journals.ekb.eg/article_100475.html
DOI: 10.21608/EJABF.2020.100475
12. Madelyn N. Moawad, Abeer A.M. El-Sayed & Naglaa A. El-Naggar (2020) Biosorption of cadmium and nickel ions using marine macrophyte, Cymodocea nodosa, Chemistry and Ecology, 36:5, 458-474. https://doi.org/10.1080/02757540.2020.1752199
13. Naglaa A. El-Naggar and Hosny E. Emara (2021) The Pollution Level, Spatial and Temporal Distribution Trend and Risk Assessment of toxic phenolic Compounds from an extremely polluted coastal wetland (El-Mex Bay and its Coastal Environment, Egypt), Proceedings of 3rd Virtual international Conference of chemistry, college of science, University of Basrah, 14- 18 February, p. 26 -27
14. Naglaa A. El-Naggar, Ahmed E. Rifaat, AQUASEA hydrodynamic and transport model: Salinity and dissolved oxygen simulation in El-Burullus Lake (Nile Delta, Egypt) considering different boundary conditions, Egyptian Journal of Aquatic Research, Vol. 48, Issue 2, 2022, Pages 107-113. https://doi.org/10.1016/j.ejar.2022.01.004
15. Naglaa A. El-Naggar, Madelyn N. Moawad & Eman F. Ahmed. Toxic phenolic compounds in the Egyptian coastal waters of Alexandria: spatial distribution, source identification, and ecological risk assessment, Water Science, 36:1, 2022, 32-40.
https://doi.org/10.1080/23570008.2022.2031724
16. Madelyn N. Moawad, Abeer A.M. El-Sayed, Hala H. Abd El Latif, Naglaa A. El-Naggar, Nihal G. Shams El-Din, Hermine R.Z. Tadros, Chemical characterization and biochemical activity of polysaccharides isolated from Egyptian Ulva fasciata Delile, Oceanologia, Vol. 64, Issue 1, 2022, Pages 117-130. https://doi.org/10.1016/j.oceano.2021.09.008
17. Hermine R.Z. Tadros, Naglaa A. El-Naggar, Abeer A.M. El-Sayed, Amaal E.A. Abou-Taleb, Madelyn N. Moawad, The antifouling efficacy of crude extracts isolated from mollusc species (Paratapes textilis), International Biodeterioration & Biodegradation, Volume 176, 2023, 105525.
https://doi.org/10.1016/j.ibiod.2022.105525
18. Ramzy B. Nessim, Madelyn Nabil Moawad, Naglaa A. El-Naggar, Physicochemical characteristics and eutrophication condition of Alexandria beach water associated with Corniche widening, Egyptian Journal of Aquatic Biology & Fisheries, 2023, Vol. 27(2): 661 – 683.
DOI: 10.21608/ejabf.2023.297304
19. Naglaa A. El-Naggar, A Brief Review of Water Quality Models: AQUASEA, Egyptian Journal of Aquatic Biology and Fisheries, 2025, Vol. 29(1): 2697 – 2716.
20.
- Naglaa A. El-Naggar, Ahmed E. Rifaat (2019), Hydrodynamic and Water Quality Modeling of Lake Mariout, (Nile Delta, Northern Egypt). In: Negm A., Bek M., Abdel-Fattah S. (eds) Egyptian Coastal Lakes and wetlands: Part I. The Handbook of Environmental Chemistry, vol 71. Springer, Cham.
http://link.springer.com/chapter/10.1007/698_2017_132
http://link.springer.com/book/10.1007%2F978-3-319-93590-4
